Dados do Trabalho


Título

COMPREHENSIVE GENETIC ANALYSIS IN A PEDIATRIC CASE OF INTELLECTUAL DISABILITY AND EPILEPSY: IDENTIFICATION OF PATHOGENIC GRIN2A AND PHF21A VARIANTS

Apresentação do caso único

A six-year-old girl with a history of global developmental delay, syndromic intellectual disability without a recognizable pattern and epilepsy was referred to a pediatric neurology outpatient clinic. Since nine months old, she exhibited hypotonia, delayed motor milestones, and speech difficulties. At five years old, she experienced focal seizures during sleep, diagnosed as epilepsy. Genetic testing revealed two likely pathogenic variants, in GRIN2A and PHF21A genes. The father also carried the GRIN2A variant, which was not described previously in literature, while the PHF21A variant was de novo.

Discussão

GRIN2A mutations are linked to a range of neurodevelopmental disorders, including developmental delay, epilepsy, language disorders, and neuropsychiatric issues, with a high phenotypic variability and autosomal dominant inheritance. PHF21A mutations are associated with intellectual disability, craniofacial abnormalities, hypotonia, epilepsy, and neurobehavioral problems, including autism. The presence of both GRIN2A and PHF21A variants in the patient contributes to her clinical phenotype, highlighting the complexity of genetic influences in neurodevelopmental disorders. This case emphasizes the importance of next-generation sequencing in identifying the genetic basis of intellectual disability and epilepsy, particularly when other diagnostic tests are inconclusive.

Comentários finais

This case illustrates the critical role of genetic testing in diagnosing complex neurodevelopmental disorders. The identification of pathogenic variants in GRIN2A and PHF21A genes provided a clearer understanding of the patient's condition, informing clinical management and prognosis. Genetic diagnoses enable better clinical surveillance, guide therapeutic interventions, and contribute to valuable data for genetic databases, facilitating future research and diagnosis of similar conditions. The combination of inherited and de novo mutations in this case underscores the diverse genetic landscape of intellectual disability and epilepsy, necessitating comprehensive genetic evaluation in affected individuals.

Referências

1. Tomac V, Pušeljić S, Škrlec I, Anđelić M, Kos M, Wagner J. Etiology and the Genetic Basis of Intellectual Disability in the Pediatric Population. SEEMEDJ 2017;1(1);144-153
2. GRIN2A Study Grp, Strehlow V, Heyne HO, Vlaskamp DRM, Marwick KFM, Rudolf G et al. GRIN2A-related disorders: genotype and functional consequence predict phenotype. Brain. 2019 Jan;142(1):80-92. doi: 10.1093/brain/awy304
3. Strehlow V, Myers KA, Morgan AT, et al. GRIN2A-Related Disorders. 2016 Sep 29 [Updated 2024 Jul 4]. In: Adam MP, Feldman J, Mirzaa GM, et al., editors. GeneReviews® [Internet]. Seattle (WA): University of Washington, Seattle; 1993-2024. Available from: https://www.ncbi.nlm.nih.gov/books/NBK385627/
4. Hakimi, M-A, Bochar, DA, Chenoweth, J, Lane, WS, Mandel, G, Shiekhattar, R. A core-BRAF35 complex containing histone deacetylase mediates repression of neuronal-specific genes. Proc. Nat. Acad. Sci. 99: 7420-7425, 2002.
5. Potocki L, Neira-Fresneda J, Yuan B. Potocki-Lupski Syndrome. 2017 Aug 24. In: Adam MP, Feldman J, Mirzaa GM, et al., editors. GeneReviews® [Internet]. Seattle (WA): University of Washington, Seattle; 1993-2024. Available from: https://www.ncbi.nlm.nih.gov/books/NBK447920/
6. Kim, H-G, Kim, H-T, Leach, NT, Lan, F, Ullmann, R, Silahtaroglu, A, Kurth, I, Nowka, A, Seong, IS, Shen, Y, Talkowski, ME, Ruderfer, D, and 23 others. Translocations disrupting PHF21A in the Potocki-Shaffer-syndrome region are associated with intellectual disability and craniofacial anomalies. Am. J. Hum. Genet. 91: 56-72, 2012
7. McCool, C, Spinks-Franklin, A, Noroski, LM, Potocki, L. Potocki-Shaffer syndrome in a child without intellectual disability--the role of PHF21A in cognitive function. Am. J. Med. Genet. 173A: 716-720, 2017.
8. Kim HG, Rosenfeld JA, Scott DA, et al. Disruption of PHF21A causes syndromic intellectual disability with craniofacial anomalies, epilepsy, hypotonia, and neurobehavioral problems including autism. Mol Autism. 2019;10:35. Published 2019 Oct 22. doi:10.1186/s13229-019-0286-0
9. Poole RL, Bijlsma EK, Houge G, et al. The PHF21A neurodevelopmental disorder: an evaluation of clinical data from 13 patients. Clin Dysmorphol. 2023;32(2):49-54. doi:10.1097/MCD.0000000000000455
10. Richards S, Aziz N, Bale S, et al. Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology. Genet Med. 2015;17(5):405-424. doi:10.1038/gim.2015.30
11. Landrum MJ, Lee JM, Benson M, et al. ClinVar: improving access to variant interpretations and supporting evidence. Nucleic Acids Res. 2018;46(D1):D1062-D1067. doi:10.1093/nar/gkx1153
12. Lesca G, Rudolf G, Bruneau N, et al. GRIN2A mutations in acquired epileptic aphasia and related childhood focal epilepsies and encephalopathies with speech and language dysfunction. Nat Genet. 2013;45(9):1061-1066. doi:10.1038/ng.2726
13. Lemke JR, Lal D, Reinthaler EM, et al. Mutations in GRIN2A cause idiopathic focal epilepsy with rolandic spikes. Nat Genet. 2013;45(9):1067-1072. doi:10.1038/ng.272
14. Chen H, Chen Y, Wu H, et al. De novo variants in PHF21A cause intellectual developmental disorder with behavioral abnormalities and craniofacial dysmorphism with or without seizures: A case report and literature review. Seizure. 2023;111:138-146. doi:10.1016/j.seizure.2023.08.009
15. Hamanaka K, Sugawara Y, Shimoji T, et al. De novo truncating variants in PHF21A cause intellectual disability and craniofacial anomalies. Eur J Hum Genet. 2019;27(3):378-383. doi:10.1038/s41431-018-0289

Palavras Chave

Neurodevelopmental Delay; genetic disorder; epilepsy

Área

Neurogenética

Autores

MARIANA REBELATTO COLETTI, VINÍCIUS LOPES BRAGA, RAFAELA FARIA DE OLIVEIRA, VINICIUS ALVES LIMA, LOUISE SCRIDELLI TAVARES, JULIANA HARUMI ARITA, ALULIN TÁCIO QUADROS SANTOS MONTEIRO FONSECA, MARCELO DE MELO ARAGÃO, RICARDO DA SILVA PINHO